CodeMeta overview
This page gives a succinct overview of all software pages that export to CodeMeta.
Warning: this feature is still in development, so the generated CodeMeta data might still
change.
The Automated pipeline for Consistent Outputs from Research Publications (Auto-CORPus) is a tool for the standardisation and conversion of publication HTML to three convenient machine-interpretable outputs (full-text, tables, abbreviations) in BioC-JSON formats to support biomedical text analytics.
Brian is a free, open source simulator for spiking neural networks. It is written in the Python programming language and is available on almost all platforms. Brian is designed to be easy to learn and use, highly flexible and easily extensible.
A Python application for detecting, measuring, and analyzing bubbles in images
The caper package for R provides a set of tools for phylogenetic comparative analyses, primary implementations of phylogenetic independent contrasts and phylogenetic generalised least squares.
Code repository for the creation and annotation of corpora in the CoDiet project providing scripts to generate Bronze and Silver annotated test datasets. It leverages multiple pipelines, including dictionary matching, MetaMap, enzyme annotation, PhenoBERT, MicrobELP, and BERN2.
Differentiable physics framework for voxel-based microstructure simulations
Solve forward and inverse problems related to partial differential equations using finite basis physics-informed neural networks (FBPINNs).
Fluidity is an open source, general purpose, multiphase computational fluid dynamics code capable of numerically solving the Navier-Stokes equation and accompanying field equations on arbitrary unstructured finite element meshes in one, two and three dimensions.
IC-FERST is a next generation reservoir simulator based on the Double-Control-Volume Finite Element method, dynamic unstructured mesh optimisation and surface-based modelling for the geological representation.
An easy-to-use, interactive web site for estimating the regional environmental consequences of an impact on Earth. This program will estimate the ejecta distribution, ground shaking, atmospheric blast wave, and thermal effects of an impact as well as the size of the crater produced.
A PyTorch-based toolkit for simulating communication systems
Extend prefect.io into a robust managed file transfer solution
UI/API/programmatic creation of adhoc and cron file flows to upload and download files between servers and systems.
Supports any combo of local, network, SFTP and cloud storage (thanks to rclone).
microbELP is a text mining pipeline for automatic recognition and normalisation of microbiome-related entities in biomedical literature.
It identifies microbial mentions (excluding viruses) in full-text scientific articles and links them to their NCBI Taxonomy identifiers.
Tensor product based finite element package designed to allow construction of low- and high-order solvers which can run efficiently on large HPC CPU and GPU platforms, allowing high-fidelity modelling of PDEs. Several application solvers (e.g. fluid dynamics) are included.
ohvbd is an R package for retrieving (and parsing) data from a network of disease vector data sources.
A GUI-forward Python framework for automating experimental setups. It focuses on abstracting communication with a piece of hardware into standard inputs, outputs, and actions, automatically generating UI components and a universal API.
Python reader/writer for CSV files with YAML header information
Laboratory hardware support Pieces for the puzzlepiece GUI & lab automation framework.
The safedata_validator package provides methods to validate whether XLSX files containing formatted data and metadata are consistent with the SAFE Project ecological metadata standard.
Python package to aid materials design and informatics
A multi-scale, python-based library for the modelling of solar cells and semiconductor materials.
Macroscopic Percolation upscaling library for dynamic subsurface carbon storage flow simulations
SWMManywhere is a tool to synthesise urban drainage network models (UDMs) using publicly available data such as street network, DEM, and building footprints, across the globe. It also provides tools for generating SWMM input files and performing simulations for the synthesised UDMs.
Thetis is an unstructured grid coastal ocean model built using the Firedrake finite element framework. Currently Thetis consists of 2D depth averaged and full 3D baroclinic models.
Large-eddy-simulation software for urban flow, dispersion and microclimate modelling
WSIMOD is a software for simulating water quality and quantity