Skip to main content
Ctrl K

All software

15 software items. Page 1 of 2. 12 items per page.
1-12 of 15

Brian

Brian is a free, open source simulator for spiking neural networks. It is written in the Python programming language and is available on almost all platforms. Brian is designed to be easy to learn and use, highly flexible and easily extensible.

  • biological neural networks
  • computational neuroscience
  • Python
  • + 1
  • (C)
  • (C++)
  • (Cython)
  • + 5
5
1878

Impact: Earth!

An easy-to-use, interactive web site for estimating the regional environmental consequences of an impact on Earth. This program will estimate the ejecta distribution, ground shaking, atmospheric blast wave, and thermal effects of an impact as well as the size of the crater produced.

  • asteroid
  • astronomy
  • earth-science
  • + 6
  • (CSS)
  • (HTML)
  • (JavaScript)
  • + 2
4
428

FBPINNs

Solve forward and inverse problems related to partial differential equations using finite basis physics-informed neural networks (FBPINNs).

  • differential equations
  • domain decomposition
  • jax
  • + 2
  • (Python)
1
337

IC-FERST

IC-FERST is a next generation reservoir simulator based on the Double-Control-Volume Finite Element method, dynamic unstructured mesh optimisation and surface-based modelling for the geological representation.

  • cfd
  • computational-fluid-dynamics
  • geophysics
  • + 1
  • (Assembly)
  • (Batchfile)
  • (C)
  • + 16
4
128

Solcore

A multi-scale, python-based library for the modelling of solar cells and semiconductor materials.

  • Python
  • semiconductors
  • solar cells
19
88

WSIMOD

WSIMOD is a software for simulating water quality and quantity

  • Hydrology
  • Integrated modelling
  • Pollution
  • + 3
3
24

Auto-CORPus

The Automated pipeline for Consistent Outputs from Research Publications (Auto-CORPus) is a tool for the standardisation and conversion of publication HTML to three convenient machine-interpretable outputs (full-text, tables, abbreviations) in BioC-JSON formats to support biomedical text analytics.

  • bioc
  • html
  • information retrieval
  • + 4
8
11

SWMManywhere

SWMManywhere is a tool to synthesise urban drainage network models (UDMs) using publicly available data such as street network, DEM, and building footprints, across the globe. It also provides tools for generating SWMM input files and performing simulations for the synthesised UDMs.

  • Algorithmic network generation
  • Hydraulic modelling
  • Network topology
  • + 2
3
4

CoDiet-Corpus

Code repository for the creation and annotation of corpora in the CoDiet project providing scripts to generate Bronze and Silver annotated test datasets. It leverages multiple pipelines, including dictionary matching, MetaMap, enzyme annotation, PhenoBERT, MicrobELP, and BERN2.

  • bionlp
  • named entity recognition
  • natural language processing
  • + 3
2
2

MicrobELP

microbELP is a text mining pipeline for automatic recognition and normalisation of microbiome-related entities in biomedical literature. It identifies microbial mentions (excluding viruses) in full-text scientific articles and links them to their NCBI Taxonomy identifiers.

  • bionlp
  • entity linking
  • information retrieval
  • + 8
5
1

caper

The caper package for R provides a set of tools for phylogenetic comparative analyses, primary implementations of phylogenetic independent contrasts and phylogenetic generalised least squares.

0
0

Managed-File-Transfer for Prefect.IO

Extend prefect.io into a robust managed file transfer solution UI/API/programmatic creation of adhoc and cron file flows to upload and download files between servers and systems. Supports any combo of local, network, SFTP and cloud storage (thanks to rclone).

  • (Dockerfile)
  • (Python)
  • (Shell)
0
0